A couple of things come to mind. First, quadruple check your firing order. Depending on the cam, your engine could have 2 different firing orders. Doesn't matter if it's a 302/5.0 or a 351W either. If the cam has ever been changed, the firing order could have as well.
Yes, if your wires are off, you would probably feel the wrong running all the way from idle, but it's still worth checking, in case it's just one pair of wires off.
How long since a tune up again? Maybe one plug is not firing right and you're only feeling it at the upper rpm range.
Sorry if you already went over some of that. I haven't re-read the first page to re-familiarize myself with what's going on.
To eliminate the possibility that it's a driven accessory going bad, remove the belt(s) from the front of the engine and run it up again. If the vibration is gone, it's one of the front drive accessories.
Obviously, you can only run it this way for a couple of minutes since the water pump is not pumping, but it's perfectly fine to run it for a test.
Good luck.
Paul