Hey Johnnyb. Yep, it's at least not a simple fit.
We've talked about it here and on other forums before (been a long time now though) and about the only way to mount it into the stock location would be to modify the wheel well like MD was saying. This would provide more space to the rear and let it sit flat. Pretty much anyway...
And then it's still not a guarantee that it will clear all radiators. Some maybe, but it's a tight fit as you've found.
And then moving it over all the way to the fender apron to for better clearance of other things still leads to the other issue you found, which is access to the retaining screws. Not an impossible fix though, as you'd need to drill/cut access holes for a wrench/socket into the fender lip. I have a hole in the fender lip of my '68 to access the site window for the A/C receiver/dryer thingy. Same concept, but they'd only need to be big enough for an Allen wrench. Or a little larger if you use Allen head sockets. But doable.
Then to remove the outer battery from under the fender lip, since you can't just lift up on it or even the bracket I don't think, you'd need to take out the inner one first then slide the second one over to clear the fender. Not as quick a process, but not a major hurdle either.
So it's a "universal" fitment part, meant to go anywhere that there is physical room for it and the batteries, and at least a bit of a flat surface to attach it to. Including underneath vehicles, in the beds of trucks or Broncos where nothing is going to interfere with that. Or even on a trailer when that's an option.
I've even seen where someone modified the center of their passenger wheel well (created a "pocket") to allow the tray to sit down lower, well rearward of the stock location. Custom modifications for sure. With a fiberglass hood that had a tiny bit more clearance in that area and no worry about shorting out the terminals either, it seemed to work pretty good for them.
It would limit wheel travel there perhaps, but that's not an issue for most anymore I don't think. At least it's a solution for some.
We've seen others who've mounted dual batteries in the stock location using their own custom fabbed tie-down method, but every one I've seen still had the front of the wheel well cut out for battery clearance. Ours would be a nice pre-made part for those types of installations, but lots of fiddling about with sheet metal is required no matter what.
Sorry about the hassle. But it sounds like the ideas were flowing for a minute. Be nice if others can show their installs. Whether in the compartment or elsewhere, just to see what they've done.
Paul