In theory, the NV3550 should work. Since you are dealing with a 6 cylinder, you will be out of the norm. You will have to adapt most everyones thoughts on V8 into the 6 cylinder world.
Since the 6 and 8 both have the same bolt pattern where the trans bolts to the bellhousing, and the same input splines. (as proven by countless people who did bad V8 swaps keeping the 6 cylinder trans) If there is a transmission that will bolt to the stock V8 bellhousing, it should bolt to the 6 cylinder bellhousing. AA makes a kit to adapt the NV3550 to a V8 bell housing, so it should work on the I6 with little changes. You will have to move the transfer case back a little and change the driveshafts. And no matter what you will need to cut a hole in the floor for the shifter.
If you are looking at automatics, I remember some good tech stuff at
http://www.fordsix.com/tech. But I think the I6 would be better suited to a manual transmission in a Bronco.