There is a test port on the back of your PCM - you MAY have to cut the metal case to get at it, I've got one I could sell you already cut, if not it's going up on Corral.
Nearly everything will just clip in, the only thing you may have an issue with are the IAC and TPS stuff, but you can simply cut and modift the harness on the spot to work, or get the sensor for the year of that harness.
IF you need to replace a sensor replace it with whatever year sensor your harness is from - just makes sense.
I originally ran a SD bank fire fuel injection off a 89 Grand Marquis 302 - ran perfect until the 200K+ motor didn't like bouncing off the rev limiter anymore ;D
Then I got a Mustang harness/PCM and put together a 351W with GT40 heads and installed it, and WOW - talk about a power increase!
I've got about 50 hours on it and I'll finish cleaning up the wires, but for my trail simplicity I've got my PCM mounted ina waterproof box on the fender - keeps it warm and dry and accessable.
When I got the new harness and laid it out there was little modifications to make - I had to lengthen the MAF sensor wires as I've got my intake flipped to the drivers side and beyond that I didn't have to touch anything else. I removed the airbag and emissions crap and didn't plug in the EGR, air pump or A/C stuff and it runs like a dream.