You don't want them to be equal, you want them to be balanced with respect to the front/rear brake bias. On a short wheelbase, high CoG rig, I'd be shocked if your rear brakes were contributing more than 25% to the overall braking equation at near maximum deceleration stops. If we assume roughly comparable rotor diameters, then I would aim for a rear caliper piston area around 1/2 that of the front calipers or less, so 3.77 square inches or less, which equates to a 2.19" [55.6mm] piston diameter. For reference, the Explorer rear brake calipers have a 1.89" [48mm] piston diameter and ~2.81 in^2 piston area.
If you go smaller than that due to caliper options and find that you want more rear bias, you could always reduce the front caliper piston area back down to the smaller piston front caliper. Personally, I don't see the need for the oversized front calipers and the hydroboost unless you just really like a super-light pedal and sensitive modulation. Brake pedal feel is largely subjective, but I prefer a little more pedal effort between nothing and brake lockup myself.