Funny you mention that Matt. First thing I thought of when you said you don't like body lifts was modifying the tunnel.
Unfortunately, my slow work ethic guarantees that I can't say whether the big mounts would work or not, because even though I have them and have the NV3550 to go in, it's going to remain undone for awhile yet.
Maybe someone who's done the trans swap with a 1" body lift can comment on whether or not a loss of just 1/4" or so will have meant the tunnel would hit the trans. Lots of them out there, but don't remember anyone ever reporting the exact amount of clearance.
Will yours be a stock-ish setup with stock bumpers? In my opinion the stock stuff is what shows the gaps the most.
Aftermarket bumpers are made in such a way as to cover up the additional space of a 1 or even a 2 inch body lift sometimes. Especially rears with a tire carrier.
Bottom line though, with that 1/4" in mind do you really think a 1/4 inch is going to make enough difference to bother with?
A much greater cost (you have to buy two kits) coupled with some improper fitment with regard to the sleeves and such (different size holes in the frame mounts), and you might be better off just making your own body lift pucks to go on top of stock mounts at the minimum height needed that you yourself can determine when you're doing the job.
Lower is better, but is it better enough.
That's my take on it anyway.
Paul