You do need to make/buy your own charge wire from the alternator's main output to the battery, just like you thought, and oldskool said.
I like to use protection (for the wires!) on the ones I do, and Ford uses fusible links from the factory, but a lot of people don't and haven't had any problems yet.
Up to you, but keep protection in mind. For the wires!
You can use plain old battery/starter cable from your local auto parts store, or make your own from battery or welding cable. The typical gauge of the store bought ones, around here at least, tend to be 6 gauge at the small end, and 2 gauge at the large end. Most of the ones with eyelets at both ends (starter cable) that I see are either 6ga or 4ga.
Either one of those is more than sufficient in the lengths that we're talking about (1 to 2 feet) here.
The longer you plan to make it, the larger gauge you should use.
I think most of the people here seem to lke using 4ga cable. That's probably a good size to make sure you never fall short when you really need it. Some even use 2/0 gauge welding cable too. Just because they can. Yeah, it's overkill, but as we say when out in the middle of nowhere, there's no such thing as overkill when it comes to the size of your battery cables and the number of your grounds.
Just bought another batch of 100' welding cable myself, for making up systems.
I like 1/0 for the mains, and 6 gauge for the supplementary branches. With welding cable, those sizes (smaller outside diameter than standard battery cable of the same gauge) seem to be a good compromise between capacity, flexibility, and size
Good luck. Sounds like you're almost there.
Paul