If the Ford is from an EB or other early style with "standard rotation" or "standard cut" gears, then yes it should work.
Back in the day, all the 44 carriers were the same no matter what rig they came from. There were other differences in the diff assemblies of course, but the carrier and R&P gears were the same.
But once Ford had them build a front-specific Dana 44, and then Jeep started using unique-to-Jeep stuff later, all bets were off. Even though I think some carriers stayed the same even with the new cut of the gears.
So yes, I'm pretty sure anything of a Scout vintage, going into anything of an EB vintage 44, it should work.
Anyone else know what might be different?
Paul