Sorry, when I answered there were no responses showing, so asked the question. Maybe that was just from the duplicate being combined? Probably.
Anyway, an E-core coil is usually run from a full 12v, as are most Duraspark ignitions. Your original coil wiring would have a resistor to lower it more to the 6-9 volt range to keep old coils and points systems happy.
Seems to me then, from what the others posted, that you could do it either way. If you use the old wire however, you're likely not getting the new coil's full potential output.
If it was me, I'd chance running a new wire to the positive side of the coil and running the full system voltage, rather than the old resistor wire. If it turns out to shorten the life of the coil due to some fiddledeestickness of the old Duraspark system, then it's a lesson learned. I don't think it will though, which is why I'd run a new wire with 12v to the coil and leave the stock distributor and it's wiring in place.
The wires should then be:
1. Leave the Green w/yellow on the negative terminal of the coil
2. Replace the Red w/green wire at the positive, with a non-resistor wire spliced to an "on in RUN only" circuit (easiest might be just do it at the back of the key)
3. Leave the distributor and harness alone.
You're obviously going to have to cut out the old horseshoe connector and use whatever terminal is appropriate for the e-coil. You can probably get a stock connector either at the junkyard or at your local auto parts store.
Whatever circuit you choose to use, make sure it's one of the RUN-only circuits. If you use one that's hot in ACC too, then you could overheat your coil when just listening to the radio. It's not as big a problem with an e-core coil as it is with the old oil-filled types, but why chance it?
Paul