I would be leery of installing a higher output alternator without modifying the wiring to protect everything. The stock alternator is 90amp, a 3G will be 130, and anything built for high output could go north from there.
Modification to the wiring is easy to do and will save a ton of trouble. The stock alternator wire loops through the ammeter, carrying current all the way to the dash and back before it gets to the battery
With your alternator wired direct to the battery your power goes where it is needed, and isolates your stock wiring from receiving all that amperage traveling long distance on a small wire. You still hook up your voltage regulator of course, which will control everything just like it did before. If you go 3G the regulator is attached to the alternator and cleans up a mess of wires for the stock box type.
There is a lot of info on the 3G swap here and elsewhere online, a search for 3G swap should have you reading for hours, and there are even plenty of diagrams to show how to wire it. And 3G or stock style alternator, if your going higher output I'd wire it the same.
And don't forget or even skimp out on the fuses and fusible links. Wired properly your stock wiring would be very protected from surges and in the even something did go wrong you would only be replacing a fuse or wire end, not a whole harness.