And in the real world, whether the frame or the body, Broncos did not always sit level right from the factory. They're a truck/utility vehicle with different optional GVWR ratings and spring rates, and often sit with a rear-high rake.
Then change the weight by removing the hard top, or if you have a U13 that did not even come with a top, your level goes out the window.
If you're trying to just find a level point so you can verify the rest, then make your body level because that's how you want it, then by all means find that spot.
I gather though from your question regarding when the wheels are on the ground, then I'd have to say no, there is no zero-point.
Even if only for just that factory rake that was on some Broncos, I seriously doubt there was any point where Ford cared whether or not it sat level front-to-rear.
Where you show your level on top of the body mount is likely as perfect a reference spot as any, as the body sat pretty square/level on the frame if I'm not mistaken (which I could very well be) and that would at least give you your starting point.
Paul