If money is no object, contact Rockland Standard Gear.
http://www.rsgear.com/
They have a transmission combination that uses a Tremec T56 (think Cobra Mustangs, Corvettes, Camaros, Vipers) that's rated to 700 horsepower and uses the Corvette intermediate housing that will provide the mating surface for an adapter to a transfer case. They provide the adapter as well. A Dana 20 might be adapted here but the ideal setup would be an Atlas since the gearing of the T56 is very tall and car-like in first gear where the extra low gearing of the Atlas can be very useful. There are plenty of bellhousings to mount the T56 to the Coyote.
What you get here is a very strong car transmission that shifts super fast. We're talking faster than you can move the clutch lever in and out. This transmission was available in the Chevy SSR pickup truck which had a curb weight on the order of a Bronco so there's no question of it's strength (unless we're talking about one of the early Borg Warner versions that came in the early 90's Camaros). Matter of fact, I was watching a Youtube video just last night about a guy with a 1966 Ford Fairlane running a twin turbo Windsor-based 427. He was running low 10's to high 9's in the quarter mile and his transmission of choice is a T56. It was very impressive! He even mentioned that, in that car with that engine, he would usually see as high as 20 mpg on the highway!
Also, both 5th gear and 6th gear are overdrives so you'd definitely want to take into account the rpm range that the Coyote is happy with, the relatively poor drag coefficient afforded by the barn-door-bronco body shape, the tire size you want to run, and the cruising speed you want before regearing the axles to suit.
I was looking into this combination before I decided that my wife should be able to happily drive my '69. Now I'm going with a 4R70W.